If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ), 'gf_id' => 'HOM05D000677', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000677' ), 'data_identifier' => 'HOM05D000677', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000677', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '845', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p16180' => 'bna', 'A02p33460' => 'bna', 'A06p09810' => 'bna', 'A06p09920' => 'bna', 'A08p32210' => 'bna', 'A09p62620' => 'bna', 'A09p62800' => 'bna', 'Aa31LG1G1110' => 'aar', 'Aa31LG1G1180' => 'aar', 'Aa31LG2G7150' => 'aar', 'Aa31LG7G10950' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1132' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.440' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1702' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3351' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_271.4' => 'aag', 'Actinidia12326' => 'ach', 'Actinidia16164' => 'ach', 'Actinidia16165' => 'ach', 'Actinidia18345' => 'ach', 'Actinidia25573' => 'ach', 'Actinidia25574' => 'ach', 'Actinidia28634' => 'ach', 'Actinidia32291' => 'ach', 'Ah.02g114910' => 'amhyb', 'Ah.03g138890' => 'amhyb', 'Ah.03g139110' => 'amhyb', 'Ah.15g090810' => 'amhyb', 'AL1G25540' => 'aly', 'AL1G25730' => 'aly', 'AL5G13210' => 'aly', 'AL7G28310' => 'aly', 'AL8G24620' => 'aly', 'Aqoxy2G00293' => 'aox', 'Aqoxy2G01253' => 'aox', 'Aqoxy2G02224' => 'aox', 'Aqoxy3G00497' => 'aox', 'Aqoxy3G03574' => 'aox', 'Aqoxy5G03386' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6TI6M9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.718L0E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7KBIJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB8STF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FHX6WZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FXM0G0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3JZ4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q94Q39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE4J6B' => 'arhy', 'AT1G13750' => 'ath', 'AT1G13900' => 'ath', 'AT2G03450' => 'ath', 'AT4G24890' => 'ath', 'AT5G50400' => 'ath', 'ATR0064G125' => 'atr', 'ATR0561G179' => 'atr', 'ATR0721G131' => 'atr', 'Atru.chr11.1625' => 'acertr', 'Atru.chr11.1670_Atru.chr11.1671' => 'acertr', 'Atru.chr11.1677' => 'acertr', 'Atru.chr11.1678' => 'acertr', 'Atru.chr11.2471' => 'acertr', 'Atru.chr11.2500' => 'acertr', 'Atru.chr11.2501' => 'acertr', 'Atru.chr9.1123' => 'acertr', 'Atru.chr9.1125' => 'acertr', 'AUR62002444' => 'cqu', 'AUR62003097' => 'cqu', 'AUR62003124' => 'cqu', 'AUR62007915' => 'cqu', 'AUR62007945' => 'cqu', 'AUR62025943' => 'cqu', 'AUR62025944' => 'cqu', 'AUR62025945' => 'cqu', 'AUR62026815' => 'cqu', 'AUR62029616' => 'cqu', 'AUR62029617' => 'cqu', 'AUR62029895' => 'cqu', 'AUR62033811' => 'cqu', 'AUR62037236' => 'cqu', 'AUR62037237' => 'cqu', 'BcaB02g06474' => 'bca', 'BcaB03g13125' => 'bca', 'BcaB07g30300' => 'bca', 'BcaB08g34323' => 'bca', 'BcaB08g34345' => 'bca', 'BcaC03g17215' => 'bca', 'BcaC05g25283' => 'bca', 'BcaC05g25288' => 'bca', 'BcaC07g38707' => 'bca', 'BcaC07g41614' => 'bca', 'BcaC07g41623' => 'bca', 'BcaC09g52238' => 'bca', 'BcaNung06007' => 'bca', 'BolC1t01946H' => 'bol', 'BolC2t11233H' => 'bol', 'BolC5t29907H' => 'bol', 'BolC5t29916H' => 'bol', 'BolC8t49261H' => 'bol', 'BolC8t52167H' => 'bol', 'BolC8t52178H' => 'bol', 'BraA01t01554Z' => 'bra', 'BraA02t08367Z' => 'bra', 'BraA06t24171Z' => 'bra', 'BraA06t24180Z' => 'bra', 'BraA08t35144Z' => 'bra', 'BraA09t41626Z' => 'bra', 'BraA09t41642Z' => 'bra', 'C01p20170' => 'bna', 'C02p51450' => 'bna', 'C05p11600' => 'bna', 'C05p11610' => 'bna', 'C05p11690' => 'bna', 'C08p16370' => 'bna', 'C08p46180' => 'bna', 'C08p46290' => 'bna', 'CAN.G108.34' => 'can', 'CAN.G138.11' => 'can', 'CAN.G138.12' => 'can', 'CAN.G1528.6' => 'can', 'CAN.G179.42' => 'can', 'CAN.G179.52' => 'can', 'CAN.G192.12' => 'can', 'CAN.G567.97' => 'can', 'CAN.G822.5' => 'can', 'CANSAT35G0231' => 'cansat', 'CANSAT56G2618' => 'cansat', 'CANSAT64G2158' => 'cansat', 'CANSAT64G2609' => 'cansat', 'CANSAT64G2959' => 'cansat', 'CANSAT80G0361' => 'cansat', 'CANSAT80G0800' => 'cansat', 'CANSAT80G1191' => 'cansat', 'CANSAT80G1258' => 'cansat', 'CANSAT80G1409' => 'cansat', 'CANSAT80G1733' => 'cansat', 'CANSAT80G1853' => 'cansat', 'CANSAT80G1907' => 'cansat', 'CANSAT80G2439' => 'cansat', 'CANSAT80G2534' => 'cansat', 'CANSAT80G2597' => 'cansat', 'CANSAT80G2740' => 'cansat', 'CARHR014130' => 'chi', 'CARHR014270' => 'chi', 'CARHR145810' => 'chi', 'CARHR232290' => 'chi', 'Carub.0001s1360' => 'cru', 'Carub.0003s2355' => 'cru', 'Carub.0005s0242' => 'cru', 'Carub.0006s2701' => 'cru', 'Carub.0007s1618' => 'cru', 'Carub.0008s1029' => 'cru', 'Carub.0008s1051' => 'cru', 'Ca_00906_v3' => 'car', 'Ca_04976_v3' => 'car', 'Ca_08208_v3' => 'car', 'Ca_15258_v3' => 'car', 'Ca_18811_v3' => 'car', 'Ca_19648_v3' => 'car', 'CBR_g31868' => 'cbr', 'CBR_g36291' => 'cbr', 'Cc00_g33340' => 'ccan', 'Cc02_g29480' => 'ccan', 'Cc02_g29510' => 'ccan', 'Cc03_g11650' => 'ccan', 'Cc06_g20820' => 'ccan', 'Cc06_g20830' => 'ccan', 'Cc08_g16870' => 'ccan', 'Cc11_g11960' => 'ccan', 'Cc11_g12000' => 'ccan', 'Cc11_g12010' => 'ccan', 'Cc11_g12020' => 'ccan', 'Cc11_g12240' => 'ccan', 'Cc11_g12250' => 'ccan', 'Cc11_g12260' => 'ccan', 'CDE02G1969' => 'cde', 'CDE04G0516' => 'cde', 'CDE06G1190' => 'cde', 'Cfa003047' => 'cfa', 'Cfa008880' => 'cfa', 'Cfa008898' => 'cfa', 'Cfa010849' => 'cfa', 'Cfa010851' => 'cfa', 'Cfa010852' => 'cfa', 'Cfa010853' => 'cfa', 'Cfa010854' => 'cfa', 'Cfa010856' => 'cfa', 'Cfa018823' => 'cfa', 'Cfa018824' => 'cfa', 'Cfa018825' => 'cfa', 'Cfa018826' => 'cfa', 'Ciclev10019329m.g' => 'ccl', 'Ciclev10030896m.g' => 'ccl', 'Ciclev10033461m.g' => 'ccl', 'Ciclev10033538m.g' => 'ccl', 'Ciclev10033946m.g' => 'ccl', 'CiPaw.05G125200' => 'cil', 'CiPaw.05G127100' => 'cil', 'CiPaw.05G209500' => 'cil', 'CiPaw.11G007400' => 'cil', 'CiPaw.11G007500' => 'cil', 'CiPaw.11G007600' => 'cil', 'CiPaw.11G007800' => 'cil', 'CiPaw.11G007900' => 'cil', 'CiPaw.11G008000' => 'cil', 'CiPaw.13G010300' => 'cil', 'CiPaw.13G010400' => 'cil', 'ClCG01G007610' => 'cla', 'ClCG01G007620' => 'cla', 'ClCG06G017870' => 'cla', 'ClCG08G010420' => 'cla', 'ClCG09G020770' => 'cla', 'COL.COLO4_25836' => 'col', 'COL.COLO4_25840' => 'col', 'COL.COLO4_27881' => 'col', 'COL.COLO4_27918' => 'col', 'COL.COLO4_28104' => 'col', 'COL.COLO4_28118' => 'col', 'COL.COLO4_28119' => 'col', 'COL.COLO4_35846' => 'col', 'Cpa.g.c33608' => 'cpa', 'Cpa.g.sc1.102' => 'cpa', 'Cpa.g.sc1.125' => 'cpa', 'Cpa.g.sc13.119' => 'cpa', 'Cpa.g.sc13.120' => 'cpa', 'Cpa.g.sc13.121' => 'cpa', 'Cpa.g.sc197.8' => 'cpa', 'Cre11.g468500' => 'cre', 'Cre12.g500200' => 'cre', 'CsaV3_1G000580' => 'csa', 'CsaV3_5G024620' => 'csa', 'CsaV3_5G024640' => 'csa', 'CsaV3_5G024650' => 'csa', 'CsaV3_5G025610' => 'csa', 'CsaV3_6G033690' => 'csa', 'CSS0000674' => 'camsi', 'CSS0001038' => 'camsi', 'CSS0002482' => 'camsi', 'CSS0002800' => 'camsi', 'CSS0009873' => 'camsi', 'CSS0023886' => 'camsi', 'CSS0024513' => 'camsi', 'CSS0027465' => 'camsi', 'CSS0038130' => 'camsi', 'CSS0043624' => 'camsi', 'CSS0048409' => 'camsi', 'CSS0049775' => 'camsi', 'DCAR_007185' => 'dca', 'DCAR_016392' => 'dca', 'DCAR_016393' => 'dca', 'DCAR_022357' => 'dca', 'DCAR_024120' => 'dca', 'DCAR_027455' => 'dca', 'Dinv11170' => 'din', 'Dinv16713' => 'din', 'Dinv23142' => 'din', 'Dinv23143' => 'din', 'Dinv32056' => 'din', 'Dinv34069' => 'din', 'Dinv34070' => 'din', 'Dinv34088' => 'din', 'Duzib068G0911' => 'dzi', 'Duzib106G0580' => 'dzi', 'Duzib128G0211' => 'dzi', 'Duzib205G1131' => 'dzi', 'Duzib205G1625' => 'dzi', 'Duzib248G0825' => 'dzi', 'Duzib251G0683' => 'dzi', 'Duzib268G0545' => 'dzi', 'ECA232G1034' => 'eca', 'ECA232G1085' => 'eca', 'ECA233G1662' => 'eca', 'ECA234G3889' => 'eca', 'ECA246G4832' => 'eca', 'ECA247G1567' => 'eca', 'EL10Ac2g02866' => 'bvu', 'EL10Ac5g11469' => 'bvu', 'EL10Ac6g14999' => 'bvu', 'EL10Ac9g22408' => 'bvu', 'EL10As12g24005' => 'bvu', 'EL10As4g23376' => 'bvu', 'EL10As4g23383' => 'bvu', 'Eucgr.B03168' => 'egr', 'Eucgr.B03170' => 'egr', 'Eucgr.G02447' => 'egr', 'Eucgr.J01195' => 'egr', 'Eucgr.J01196' => 'egr', 'Eucgr.J01197' => 'egr', 'Eucgr.J01199' => 'egr', 'Eucgr.K02728' => 'egr', 'Eucgr.K02729' => 'egr', 'Eucgr.L02639' => 'egr', 'FAN01G1016' => 'fan', 'FAN03G0987' => 'fan', 'FAN04G0768' => 'fan', 'FAN06G4392' => 'fan', 'FAN07G0174' => 'fan', 'FAN07G2012' => 'fan', 'FAN08G0652' => 'fan', 'FAN08G0770' => 'fan', 'FAN08G1533' => 'fan', 'FAN08G2290' => 'fan', 'FAN12G0757' => 'fan', 'FAN12G3455' => 'fan', 'FAN13G0682' => 'fan', 'FAN13G1075' => 'fan', 'FAN13G1161' => 'fan', 'FAN13G1683' => 'fan', 'FAN13G1803' => 'fan', 'FAN13G3202' => 'fan', 'FAN17G2030' => 'fan', 'FAN18G0483' => 'fan', 'FAN18G0667' => 'fan', 'FAN18G1151' => 'fan', 'FAN18G2586' => 'fan', 'FAN22G0475' => 'fan', 'FAN22G1726' => 'fan', 'FAN26G0175' => 'fan', 'FAN26G2994' => 'fan', 'FAN28G1309' => 'fan', 'FvH4_4g05522' => 'fve', 'FvH4_4g30010' => 'fve', 'FvH4_4g30400' => 'fve', 'FvH4_4g35581' => 'fve', 'FvH4_5g08240' => 'fve', 'FvH4_5g08241' => 'fve', 'FvH4_5g08281' => 'fve', 'FvH4_5g08282' => 'fve', 'FvH4_5g08283' => 'fve', 'FvH4_5g08284' => 'fve', 'FvH4_5g38880' => 'fve', 'FvH4_6g46911' => 'fve', 'FvH4_7g02230' => 'fve', 'Glyma.02G117000' => 'gma', 'Glyma.04G195567' => 'gma', 'Glyma.05G047900' => 'gma', 'Glyma.06G170300' => 'gma', 'Glyma.06G170366' => 'gma', 'Glyma.06G170432' => 'gma', 'Glyma.08G291600' => 'gma', 'Glyma.09G225000' => 'gma', 'Glyma.12G012000' => 'gma', 'Glyma.17G129802' => 'gma', 'Glyma.18G132500' => 'gma', 'Glyma.20G026800' => 'gma', 'Gohir.A03G052200' => 'ghi', 'Gohir.A03G052700' => 'ghi', 'Gohir.A12G161200' => 'ghi', 'Gohir.A13G013000' => 'ghi', 'Gohir.A13G080400' => 'ghi', 'Gohir.A13G082700' => 'ghi', 'Gohir.D03G114400' => 'ghi', 'Gohir.D03G114800' => 'ghi', 'Gohir.D12G164500' => 'ghi', 'Gohir.D13G014001' => 'ghi', 'Gohir.D13G014002' => 'ghi', 'Gohir.D13G014102' => 'ghi', 'Gohir.D13G014202' => 'ghi', 'Gohir.D13G080200' => 'ghi', 'Gohir.D13G082400' => 'ghi', 'Gorai.003G120700' => 'gra', 'Gorai.003G121100' => 'gra', 'Gorai.008G177100' => 'gra', 'Gorai.013G015200' => 'gra', 'Gorai.013G015300' => 'gra', 'Gorai.013G015400' => 'gra', 'Gorai.013G091900' => 'gra', 'Gorai.013G094200' => 'gra', 'GSVIVG01000848001' => 'vvi', 'GSVIVG01008539001' => 'vvi', 'GSVIVG01008541001' => 'vvi', 'GSVIVG01012203001' => 'vvi', 'GSVIVG01012220001' => 'vvi', 'HanXRQChr01g0016411' => 'han', 'HanXRQChr02g0035061' => 'han', 'HanXRQChr08g0211751' => 'han', 'HanXRQChr09g0273161' => 'han', 'HanXRQChr12g0375221' => 'han', 'HanXRQChr12g0375231' => 'han', 'HanXRQChr12g0379761' => 'han', 'HanXRQChr13g0403851' => 'han', 'HanXRQChr16g0498171' => 'han', 'HanXRQChr16g0498181' => 'han', 'HanXRQChr16g0498201' => 'han', 'HanXRQChr16g0509671' => 'han', 'Haze_03095' => 'cav', 'Haze_03116' => 'cav', 'Haze_05316' => 'cav', 'Haze_07218' => 'cav', 'Haze_07219' => 'cav', 'Haze_07220' => 'cav', 'Haze_08484' => 'cav', 'Haze_11908' => 'cav', 'Haze_11928' => 'cav', 'Haze_16089' => 'cav', 'Haze_19501' => 'cav', 'Haze_21838' => 'cav', 'Haze_21839' => 'cav', 'Haze_21840' => 'cav', 'Haze_21841' => 'cav', 'Haze_21843' => 'cav', 'Hma1.2p1_0014F.1_g009480' => 'hma', 'Hma1.2p1_0184F.1_g081100' => 'hma', 'Hma1.2p1_0184F.1_g081110' => 'hma', 'Hma1.2p1_0357F.1_g134500' => 'hma', 'Hma1.2p1_0566F.1_g179790' => 'hma', 'HPP92_003543' => 'vpl', 'HPP92_003563' => 'vpl', 'HPP92_012303' => 'vpl', 'HPP92_016885' => 'vpl', 'HPP92_016886' => 'vpl', 'HPP92_024924' => 'vpl', 'Hund10162' => 'sun', 'Hund12587' => 'sun', 'Hund15709' => 'sun', 'Hund20216' => 'sun', 'Hund25174' => 'sun', 'Hund25176' => 'sun', 'Hund25177' => 'sun', 'Hund25192' => 'sun', 'Hund30218' => 'sun', 'Hund30219' => 'sun', 'Lalb_Chr03g0024231' => 'lal', 'Lalb_Chr05g0228061' => 'lal', 'Lalb_Chr07g0183391' => 'lal', 'Lalb_Chr07g0183401' => 'lal', 'Lalb_Chr08g0237131' => 'lal', 'Lalb_Chr09g0329081' => 'lal', 'Lalb_Chr09g0335191' => 'lal', 'Lalb_Chr10g0098861' => 'lal', 'Lalb_Chr12g0202201' => 'lal', 'Lalb_Chr12g0202211' => 'lal', 'Lalb_Chr16g0386701' => 'lal', 'Lalb_Chr17g0341201' => 'lal', 'Lj2g0005024' => 'lja', 'Lj3g0019403' => 'lja', 'Lj4g0005844' => 'lja', 'Lj4g0010407' => 'lja', 'Lj4g0017345' => 'lja', 'Lj5A701G16' => 'lonja', 'Lj5A701T19' => 'lonja', 'Lj5A708G43' => 'lonja', 'Lj5A96G50' => 'lonja', 'Lj5A96T51' => 'lonja', 'Lj5C96T7' => 'lonja', 'Lj6C779G5' => 'lonja', 'Lj6C782T10' => 'lonja', 'Lj7A579T38' => 'lonja', 'Lj9C478T18' => 'lonja', 'Lsat_1_v5_gn_1_29020' => 'lsa', 'Lsat_1_v5_gn_1_98020' => 'lsa', 'Lsat_1_v5_gn_3_53820' => 'lsa', 'Lsat_1_v5_gn_4_12180' => 'lsa', 'Lsat_1_v5_gn_4_44660' => 'lsa', 'Lsat_1_v5_gn_4_79301' => 'lsa', 'Lsat_1_v5_gn_4_80040' => 'lsa', 'Lsat_1_v5_gn_4_80060' => 'lsa', 'Lsat_1_v5_gn_4_80100' => 'lsa', 'Lsat_1_v5_gn_4_80480' => 'lsa', 'Lsat_1_v5_gn_8_46320' => 'lsa', 'Manes.01G029400' => 'mes', 'Manes.04G164100' => 'mes', 'Manes.05G110500' => 'mes', 'Manes.05G110600' => 'mes', 'Manes.06G119300' => 'mes', 'Mapoly0002s0096' => 'mpo', 'Mapoly0014s0160' => 'mpo', 'Mapoly0122s0035' => 'mpo', 'Mapoly0209s0006' => 'mpo', 'MBI05_g17777_MAGBIO' => 'mbi', 'MBI07_g31013_MAGBIO' => 'mbi', 'MBI11_g07466_MAGBIO' => 'mbi', 'MBI13_g41711_MAGBIO' => 'mbi', 'MBI16_g11813_MAGBIO' => 'mbi', 'MBI16_g16375_MAGBIO' => 'mbi', 'MBI16_g24184_MAGBIO' => 'mbi', 'MBI16_g34351_MAGBIO' => 'mbi', 'MBI16_g45198_MAGBIO' => 'mbi', 'MBI16_g46906_MAGBIO' => 'mbi', 'MCO03G476' => 'mco', 'MCO11G045' => 'mco', 'MD06G1142200' => 'mdo', 'MD06G1142300' => 'mdo', 'MD06G1142400' => 'mdo', 'MD07G1028100' => 'mdo', 'MD07G1028200' => 'mdo', 'MD07G1028400' => 'mdo', 'MD07G1028500' => 'mdo', 'MD07G1029100' => 'mdo', 'MD07G1029200' => 'mdo', 'MD07G1029700' => 'mdo', 'MD13G1064900' => 'mdo', 'MD14G1157500' => 'mdo', 'MD14G1157600' => 'mdo', 'MD15G1198300' => 'mdo', 'MD16G1061000' => 'mdo', 'MD16G1061100' => 'mdo', 'Medtr1g052505' => 'mtr', 'Medtr2g020270' => 'mtr', 'Medtr3g031590' => 'mtr', 'Medtr3g074930' => 'mtr', 'Medtr3g074960' => 'mtr', 'Medtr3g074970' => 'mtr', 'Medtr4g037670' => 'mtr', 'Medtr4g082930' => 'mtr', 'Medtr4g082940' => 'mtr', 'Medtr4g103520' => 'mtr', 'Medtr5g045600' => 'mtr', 'Medtr8g063080' => 'mtr', 'MELO3C002922.2' => 'cme', 'MELO3C011419.2' => 'cme', 'MELO3C026208.2' => 'cme', 'MELO3C033753.2' => 'cme', 'MELO3C033949.2' => 'cme', 'Migut.A01093' => 'egut', 'Migut.D00794' => 'egut', 'Migut.D00795' => 'egut', 'Migut.K01253' => 'egut', 'Migut.L00676' => 'egut', 'Migut.L01190' => 'egut', 'Migut.L01209' => 'egut', 'MSTRG.12211' => 'ama', 'MSTRG.754' => 'ama', 'MSTRG.7746' => 'ama', 'MSTRG.7759' => 'ama', 'Nitab4.5_0000014g0300' => 'nta', 'Nitab4.5_0000231g0310' => 'nta', 'Nitab4.5_0000479g0070' => 'nta', 'Nitab4.5_0000491g0110' => 'nta', 'Nitab4.5_0000491g0120' => 'nta', 'Nitab4.5_0001029g0090' => 'nta', 'Nitab4.5_0001487g0100' => 'nta', 'Nitab4.5_0002589g0070' => 'nta', 'Nitab4.5_0002720g0080' => 'nta', 'Nitab4.5_0005625g0020' => 'nta', 'Nitab4.5_0006307g0050' => 'nta', 'Nitab4.5_0007919g0010' => 'nta', 'Nitab4.5_0012560g0010' => 'nta', 'Nn3g17393' => 'nnu', 'Nn3g17710' => 'nnu', 'Nn4g22343' => 'nnu', 'Nn4g23365' => 'nnu', 'Nn4g23367' => 'nnu', 'Nn4g23368' => 'nnu', 'Nn4g23427' => 'nnu', 'Nn7g36482' => 'nnu', 'Oeu006104.1' => 'oeu', 'Oeu015746.2' => 'oeu', 'Oeu017526.1' => 'oeu', 'Oeu042847.1' => 'oeu', 'Oeu042848.1' => 'oeu', 'Oeu048141.1' => 'oeu', 'Os01g0800500' => 'osa', 'Os03g0214000' => 'osa', 'Os07g0111600' => 'osa', 'Os08g0531000' => 'osa', 'Os09g0505900' => 'osa', 'Os09g0506000' => 'osa', 'Os12g0576600' => 'osa', 'Os12g0576700' => 'osa', 'Os12g0576750' => 'osa', 'Peaxi162Scf00046g00020' => 'pax', 'Peaxi162Scf00046g00021' => 'pax', 'Peaxi162Scf00046g00119' => 'pax', 'Peaxi162Scf00074g00154' => 'pax', 'Peaxi162Scf00175g00118' => 'pax', 'Peaxi162Scf00187g01610' => 'pax', 'Peaxi162Scf00309g00120' => 'pax', 'Peaxi162Scf00904g00122' => 'pax', 'PGR044G1200' => 'pgr', 'PGR044G2533' => 'pgr', 'PGR102G1709' => 'pgr', 'PGSC0003DMG400002845' => 'stu', 'PGSC0003DMG400009075' => 'stu', 'PGSC0003DMG400012232' => 'stu', 'PGSC0003DMG400017958' => 'stu', 'PGSC0003DMG400022979' => 'stu', 'PGSC0003DMG400022980' => 'stu', 'PGSC0003DMG400028371' => 'stu', 'Phvul.002G168300' => 'pvu', 'Phvul.003G042300' => 'pvu', 'Phvul.003G055300' => 'pvu', 'Phvul.003G210800' => 'pvu', 'Phvul.011G014800' => 'pvu', 'Phvul.011G014900' => 'pvu', 'Potri.001G023400' => 'ptr', 'Potri.003G202200' => 'ptr', 'Potri.008G096000' => 'ptr', 'Potri.010G158250' => 'ptr', 'Potri.010G158400' => 'ptr', 'Potri.010G160500' => 'ptr', 'Potri.012G097400' => 'ptr', 'Potri.015G095900' => 'ptr', 'Pp3c15_6210' => 'ppa', 'Pp3c17_10460' => 'ppa', 'Pp3c1_25680' => 'ppa', 'Pp3c2_37680' => 'ppa', 'Pp3c6_25300' => 'ppa', 'Pp3c8_2430' => 'ppa', 'Pp3c8_2445' => 'ppa', 'PRCOL_00006381' => 'pco', 'Prupe.1G283200' => 'ppe', 'Prupe.1G287100' => 'ppe', 'Prupe.1G287200' => 'ppe', 'Prupe.2G028600' => 'ppe', 'Prupe.5G151400' => 'ppe', 'Prupe.5G151500' => 'ppe', 'Prupe.5G151600' => 'ppe', 'Psat0s1923g0080' => 'psa', 'Psat0s3281g0040' => 'psa', 'Psat2g118160' => 'psa', 'Psat4g065520' => 'psa', 'Psat4g126680' => 'psa', 'Psat5g140720' => 'psa', 'Psat7g135320' => 'psa', 'Psat7g223400' => 'psa', 'PSO017G0113' => 'pso', 'PSO017G5846' => 'pso', 'PSO017G7274' => 'pso', 'PSO063G4827' => 'pso', 'PSO063G6467' => 'pso', 'PSO170G0523' => 'pso', 'PSO170G0874' => 'pso', 'PSO170G3609' => 'pso', 'PSO170G6898' => 'pso', 'PSO339G0815' => 'pso', 'PSO339G5525' => 'pso', 'PSO384G1005' => 'pso', 'PSO478G4954' => 'pso', 'PSO513G0192' => 'pso', 'QL02p021060' => 'qlo', 'QL03p070752' => 'qlo', 'QL03p070789' => 'qlo', 'QL03p071066' => 'qlo', 'QL03p071143' => 'qlo', 'QL03p074115' => 'qlo', 'QL03p074143' => 'qlo', 'QL03p074196' => 'qlo', 'QL03p074210' => 'qlo', 'QL03p074230' => 'qlo', 'QL03p074245' => 'qlo', 'QL03p074263' => 'qlo', 'QL04p012780' => 'qlo', 'QL04p012805' => 'qlo', 'QL04p012819' => 'qlo', 'QL04p012835' => 'qlo', 'QL04p013338' => 'qlo', 'QL04p013348' => 'qlo', 'QL04p013364' => 'qlo', 'QL04p013371' => 'qlo', 'QL04p013403' => 'qlo', 'QL05p003233' => 'qlo', 'QL05p003237' => 'qlo', 'QL07p010952' => 'qlo', 'QL10p002979' => 'qlo', 'QL10p003006' => 'qlo', 'QL10p003026' => 'qlo', 'QL10p003038' => 'qlo', 'QL10p003052' => 'qlo', 'QL10p003120' => 'qlo', 'QL10p003169' => 'qlo', 'QL10p003196' => 'qlo', 'QL10p003227' => 'qlo', 'QL11p008157' => 'qlo', 'QL12p030713' => 'qlo', 'QL12p030778' => 'qlo', 'RcHm_v2.0_Chr1g0319551' => 'rch', 'RcHm_v2.0_Chr4g0411971' => 'rch', 'RcHm_v2.0_Chr4g0411981' => 'rch', 'RcHm_v2.0_Chr4g0424731' => 'rch', 'RcHm_v2.0_Chr4g0438291' => 'rch', 'RcHm_v2.0_Chr4g0438301' => 'rch', 'RcHm_v2.0_Chr4g0438691' => 'rch', 'RcHm_v2.0_Chr6g0289041' => 'rch', 'RcHm_v2.0_Chr7g0190231' => 'rch', 'RcHm_v2.0_Chr7g0190241' => 'rch', 'RcHm_v2.0_Chr7g0190251' => 'rch', 'RcHm_v2.0_Chr7g0190261' => 'rch', 'RcHm_v2.0_Chr7g0190281' => 'rch', 'Rhsim08G0189800' => 'rsi', 'Rhsim08G0189900' => 'rsi', 'Rhsim08G0190000' => 'rsi', 'Rhsim09G0127200' => 'rsi', 'Rhsim12G0134700' => 'rsi', 'RhsimUnG0231100' => 'rsi', 'RhsimUnG0231200' => 'rsi', 'RhsimUnG0231300' => 'rsi', 'Sabra01G0017700' => 'sbr', 'Sabra10G0120200' => 'sbr', 'Sabra10G0120300' => 'sbr', 'Sabra10G0122100' => 'sbr', 'Sabra12G0071300' => 'sbr', 'Sabra15G0116700' => 'sbr', 'SalBow2G0009' => 'sbo', 'SalBow3G3748' => 'sbo', 'SalBow3G3853' => 'sbo', 'SalBow6G0954' => 'sbo', 'Sc04g0007570' => 'sci', 'Sc04g0007580' => 'sci', 'Sc04g0007710' => 'sci', 'Sc10g0004250' => 'sci', 'Sc11g0002480' => 'sci', 'Sc11g0002490' => 'sci', 'Sc14g0006500' => 'sci', 'Sc22g0003850' => 'sci', 'Sed0009499' => 'sed', 'Sed0011308' => 'sed', 'Sed0011671' => 'sed', 'Sed0026976' => 'sed', 'SEGI_00851' => 'sgi', 'SEGI_03563' => 'sgi', 'SEGI_05383' => 'sgi', 'SEGI_09072' => 'sgi', 'SEGI_10223' => 'sgi', 'SEGI_11926' => 'sgi', 'SEGI_12436' => 'sgi', 'SEGI_13686' => 'sgi', 'SEGI_15475' => 'sgi', 'SEGI_15600' => 'sgi', 'SEGI_16670' => 'sgi', 'SEGI_19673' => 'sgi', 'SEGI_23176' => 'sgi', 'SEGI_23355' => 'sgi', 'SEGI_28592' => 'sgi', 'SEGI_30479' => 'sgi', 'SEGI_36123' => 'sgi', 'SEGI_38887' => 'sgi', 'SEGI_40315' => 'sgi', 'SGA_v2.0_scaffold158G37453' => 'sas', 'SGA_v2.0_scaffold158G37455' => 'sas', 'SGA_v2.0_scaffold36G14268' => 'sas', 'SGA_v2.0_scaffold36G14439' => 'sas', 'SGA_v2.0_scaffold36G14459' => 'sas', 'SMO002G0018' => 'smo', 'SMO005G0003' => 'smo', 'SMO077G0008' => 'smo', 'SMO116G0279' => 'smo', 'SMO116G0356' => 'smo', 'SMO116G0451' => 'smo', 'SMO117G0276' => 'smo', 'SMO119G0182' => 'smo', 'SMO122G0017' => 'smo', 'SMO146G0081' => 'smo', 'SMO174G0208' => 'smo', 'SMO174G0233' => 'smo', 'SMO200G0252' => 'smo', 'SMO235G0017' => 'smo', 'SMO242G0003' => 'smo', 'SMO245G0017' => 'smo', 'SMO274G0066' => 'smo', 'SMO320G0002' => 'smo', 'SMO356G0013' => 'smo', 'SMO356G0026' => 'smo', 'SMO356G0136' => 'smo', 'SMO356G0688' => 'smo', 'SMO361G0412' => 'smo', 'Solyc01g068380.3' => 'sly', 'Solyc04g005450.3' => 'sly', 'Solyc04g024640.1' => 'sly', 'Solyc04g024650.3' => 'sly', 'Solyc05g012260.3' => 'sly', 'Solyc07g008545.1' => 'sly', 'Solyc07g008560.3' => 'sly', 'Solyc07g008570.3' => 'sly', 'Solyc08g083250.4' => 'sly', 'Sopen01g030340' => 'spe', 'Sopen04g001450' => 'spe', 'Sopen05g007090' => 'spe', 'Sopen07g004470' => 'spe', 'Sopen07g004480' => 'spe', 'Sopen07g004490' => 'spe', 'Sopen07g004500' => 'spe', 'Sopen08g031440' => 'spe', 'Sp1g12060' => 'spa', 'Sp1g12170' => 'spa', 'Sp2g14370' => 'spa', 'Sp6g12550' => 'spa', 'Sp7g22870' => 'spa', 'SpUn0015_0090' => 'spa', 'SpUn0039_0010' => 'spa', 'TAR264G0003' => 'tar', 'TAR369G0724' => 'tar', 'TAR622G0508' => 'tar', 'TAR625G0292' => 'tar', 'TAR629G1804' => 'tar', 'TAR629G1865' => 'tar', 'TAR629G3212' => 'tar', 'THA.LOC104801818' => 'tha', 'THA.LOC104805197' => 'tha', 'THA.LOC104811590' => 'tha', 'Thecc.02G330100' => 'tca', 'Thecc.02G330300' => 'tca', 'Thecc.02G334800' => 'tca', 'Thecc.03G128700' => 'tca', 'Thecc.03G128800' => 'tca', 'Thecc.10G005500' => 'tca', 'Thecc.10G005600' => 'tca', 'Thhalv10003799m.g' => 'esa', 'Thhalv10007019m.g' => 'esa', 'Thhalv10007099m.g' => 'esa', 'Thhalv10012988m.g' => 'esa', 'Thhalv10024691m.g' => 'esa', 'TPR.G19211' => 'tpr', 'TPR.G19236' => 'tpr', 'TPR.G21748' => 'tpr', 'TPR.G24454' => 'tpr', 'TPR.G35312' => 'tpr', 'TPR.G3919' => 'tpr', 'TPR.G5011' => 'tpr', 'TPR.G7569' => 'tpr', 'TWI14G0554' => 'twi', 'TWI31G0365' => 'twi', 'TWI38G0884' => 'twi', 'TWI38G1132' => 'twi', 'TWI38G1249' => 'twi', 'TWI38G2282' => 'twi', 'TWI39G0301' => 'twi', 'TWI39G0855' => 'twi', 'TWI39G1302' => 'twi', 'TWI75G0879' => 'twi', 'TWI79G0748' => 'twi', 'unitig_62.g23944' => 'ugi', 'unitig_748.g7135' => 'ugi', 'unitig_8.g3185' => 'ugi', 'unitig_8.g3456' => 'ugi', 'vmacro10426' => 'vma', 'vmacro16374' => 'vma', 'vmacro19204' => 'vma', 'vmacro19205' => 'vma', 'vmacro23252' => 'vma', 'VMungo0251G2277' => 'vmu', 'VMungo0251G3235' => 'vmu', 'VMungo1127G2073' => 'vmu', 'VMungo1127G2079' => 'vmu', 'VMungo1215G0612' => 'vmu', 'VMungo1215G1972' => 'vmu', 'Zm00001eb029530' => 'zma', 'Zm00001eb036930' => 'zma', 'Zm00001eb086200' => 'zma', 'Zm00001eb105030' => 'zma', 'Zm00001eb292020' => 'zma', 'Zm00001eb298570' => 'zma', 'Zm00001eb369460' => 'zma', 'Zm00001eb369470' => 'zma', 'Zm00001eb400210' => 'zma', 'Zm00001eb414480' => 'zma' ) $gf_id = 'HOM05D000677' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000677' ) $data_identifier = 'HOM05D000677' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 8, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 9, 'cqu' => (int) 15, 'bca' => (int) 13, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 9, 'cansat' => (int) 17, 'chi' => (int) 4, 'cru' => (int) 7, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 14, 'cde' => (int) 3, 'cfa' => (int) 13, 'ccl' => (int) 5, 'cil' => (int) 11, 'cla' => (int) 5, 'col' => (int) 8, 'cpa' => (int) 7, 'cre' => (int) 2, 'csa' => (int) 6, 'camsi' => (int) 12, 'dca' => (int) 6, 'din' => (int) 8, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 7, 'egr' => (int) 10, 'fan' => (int) 28, 'fve' => (int) 13, 'gma' => (int) 12, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 12, 'cav' => (int) 16, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 10, 'lal' => (int) 12, 'lja' => (int) 5, 'lonja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 10, 'mco' => (int) 2, 'mdo' => (int) 16, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 8, 'oeu' => (int) 6, 'osa' => (int) 9, 'pax' => (int) 8, 'pgr' => (int) 3, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 7, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 36, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 4, 'sgi' => (int) 19, 'sas' => (int) 5, 'smo' => (int) 23, 'sly' => (int) 9, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 7, 'tha' => (int) 3, 'tca' => (int) 7, 'esa' => (int) 5, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb414480' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1